PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0190909.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 329aa    MW: 35039.1 Da    PI: 10.4025
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0190909.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.83.8e-3895188389
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++    s s  +++++s+       
  Lj0g3v0190909.1  95 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSsV--SVSLRGASNNSSlsspsld 186
                      79*************************************************************9999977732..2222222222222233333 PP

              TCP  89 .k 89 
                       k
  Lj0g3v0190909.1 187 hK 188
                      30 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.209100154IPR017887Transcription factor TCP subgroup
PfamPF036343.6E-34100288IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MCPPPVSTSS CRSIIRPLFP LSPSIQSLPH STLNSSSSSS SSSSSSSIQI PRNSHCNKPY  60
SHFSLHLLTM SSSDGTTNGS MIDPQRTNQQ QQLSVKKPPS KDRHSKVDGR GRRIRMPIIC  120
AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSSVSVS LRGASNNSSL  180
SSPSLDHKPL LAPTPTPFIL GKRIRTDDDS SPAAKDDSVG HSLVGSAAPA GLWALPARPD  240
FGQIWSFAAA AAAAPEMVVQ PAVSVSASQQ QQASFFIHHQ QQQQHQQHQQ AMGEASAARV  300
GNYLPGHLNL LASLSGGHGN SGRRDDDHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.161961e-153pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407983e-74AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047763e-74AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149583e-74AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-74CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514723.11e-122PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX26e-99TCP7_ARATH; Transcription factor TCP7
TrEMBLV7BCY61e-122V7BCY6_PHAVU; Uncharacterized protein
STRINGGLYMA10G43190.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-73TCP family protein